36 lines
1.3 KiB
Ruby
36 lines
1.3 KiB
Ruby
class Vcftools < Formula
|
|
desc "Tools for working with VCF files"
|
|
homepage "https://vcftools.github.io/"
|
|
url "https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz"
|
|
sha256 "dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "5d52f2eafbf96fcffd2b8f9804c2d0ca9752af4242c27ed5fe15a6f8cb935498" => :mojave
|
|
sha256 "2fc4ca7c7c23841a1eed8539910737b5986079be6d22d1ff8375f052266bf478" => :high_sierra
|
|
sha256 "32c81874b5d34dee1e36f2dd628cb7eaba8ecef3d612985d7c02c61d6790c5b6" => :sierra
|
|
sha256 "866bc9927660b97ae5bc34dc38db397212163ab289b3284db2d8c610b2aff3d4" => :el_capitan
|
|
end
|
|
|
|
depends_on "pkg-config" => :build
|
|
depends_on "htslib"
|
|
|
|
def install
|
|
system "./configure", "--disable-dependency-tracking",
|
|
"--disable-silent-rules",
|
|
"--prefix=#{prefix}",
|
|
"--with-pmdir=lib/perl5/site_perl"
|
|
system "make", "install"
|
|
|
|
bin.env_script_all_files(libexec/"bin", :PERL5LIB => lib/"perl5/site_perl")
|
|
end
|
|
|
|
test do
|
|
(testpath/"test.vcf").write <<~EOS
|
|
##fileformat=VCFv4.0
|
|
#CHROM POS ID REF ALT QUAL FILTER INFO
|
|
1 1 . A C 10 PASS .
|
|
EOS
|
|
system "#{bin}/vcf-validator", "test.vcf"
|
|
end
|
|
end
|