30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.3.4.1.tar.gz"
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sha256 "872f2580221dcc9bb4a8e3d04e032c168883c4c529d0733e3d94fe693f7732b2"
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bottle do
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cellar :any
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sha256 "a6351c8bd99daf742dbe510df03219b47a90e142d2d8612d64d112a5c62820aa" => :high_sierra
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sha256 "e454334bb9c1526fbc153f8f98392424942b86d82fe7c90b108578896839fcd2" => :sierra
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sha256 "b6a3b49b0464d36330ff470ee0b4a4b10afbc763a8751804365b7d782cd23c22" => :el_capitan
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end
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depends_on "tbb"
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def install
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tbb = Formula["tbb"]
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system "make", "install", "WITH_TBB=1", "prefix=#{prefix}",
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"EXTRA_FLAGS=-L #{tbb.opt_lib}", "INC=-I #{tbb.opt_include}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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