30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "http://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.6/samtools-1.6.tar.bz2"
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sha256 "ee5cd2c8d158a5969a6db59195ff90923c662000816cc0c41a190b2964dbe49e"
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bottle do
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cellar :any
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sha256 "61268ac6e463a12ea7927701af28293ee54ebe7d5b740702c6a34ce644e37443" => :high_sierra
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sha256 "5a5e616d119a7908b7a1047a1da3de8eaff39ffc3823e5577cf05542b05258e0" => :sierra
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sha256 "3cd5f5a8edb2346f178f27ec79c59044a2a59910eeb8daaa15a584afe26398af" => :el_capitan
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end
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depends_on "htslib"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"samtools", "faidx", "test.fasta"
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assert_equal "U00096.2:1-70\t70\t15\t70\t71\n", (testpath/"test.fasta.fai").read
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end
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end
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