38 lines
1.2 KiB
Ruby
38 lines
1.2 KiB
Ruby
class Spades < Formula
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desc "De novo genome sequence assembly"
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homepage "http://cab.spbu.ru/software/spades/"
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url "http://cab.spbu.ru/files/release3.11.1/SPAdes-3.11.1.tar.gz"
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sha256 "3ab85d86bf7d595bd8adf11c971f5d258bbbd2574b7c1703b16d6639a725b474"
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revision 3
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bottle do
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cellar :any
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sha256 "223ae1240164641e14120345c768d166fa4adfbd9368ee70e0acef1700cc91d2" => :high_sierra
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sha256 "6977379e053ba4b8784e20df6103ac950bff11cbc159178404f321198f8fb156" => :sierra
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sha256 "2bd814781ddaca6f9187c75dc06ae699f4ec51647aa569180aa50fa6e1980d6d" => :el_capitan
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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depends_on "python@2"
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# Fix compilation with GCC 8.1 and later, remove in 3.12
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# https://github.com/ablab/spades/pull/106
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patch do
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url "https://raw.githubusercontent.com/Homebrew/formula-patches/cbb208e3/spades/gcc8-fix.diff"
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sha256 "9d0bb51570d0619d3dae0191695eebec60da392d2d38fdc464b1fd063173ca07"
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end
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fails_with :clang # no OpenMP support
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def install
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mkdir "src/build" do
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system "cmake", "..", *std_cmake_args
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system "make", "install"
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end
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end
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test do
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assert_match "TEST PASSED CORRECTLY", shell_output("#{bin}/spades.py --test")
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end
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end
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