40 lines
1.4 KiB
Ruby
40 lines
1.4 KiB
Ruby
class Beast < Formula
|
|
desc "Bayesian Evolutionary Analysis Sampling Trees"
|
|
homepage "http://beast.community/"
|
|
url "https://github.com/beast-dev/beast-mcmc/archive/v1.10.3.tar.gz"
|
|
sha256 "16dbccbc5d88e8a66b87ded34cf6370139b60b998f48bd603869e84ea79794ec"
|
|
head "https://github.com/beast-dev/beast-mcmc.git"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "f49c97db13463e710043cddd71e390b6c0269cc9450f15b6a03acc6640e1748d" => :mojave
|
|
sha256 "0010bec81cad92223de7397ce0aa31ad36143934c92f453de1b4ceb36483db94" => :high_sierra
|
|
sha256 "7b60597acedc5dfd8aa1d36fd98adefb197c5db2172e72139769d822caecdd28" => :sierra
|
|
end
|
|
|
|
depends_on "ant" => :build
|
|
depends_on "beagle"
|
|
depends_on :java => "1.7+"
|
|
|
|
def install
|
|
system "ant", "linux"
|
|
libexec.install Dir["release/Linux/BEASTv*/*"]
|
|
pkgshare.install_symlink libexec/"examples"
|
|
bin.install_symlink Dir[libexec/"bin/*"]
|
|
end
|
|
|
|
test do
|
|
cp pkgshare/"examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml", testpath
|
|
|
|
# Run fewer generations to speed up tests
|
|
inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
|
|
'chainLength="100000"'
|
|
|
|
system "#{bin}/beast", "testUCRelaxedClockLogNormal.xml"
|
|
|
|
%w[ops log trees].each do |ext|
|
|
output = "testUCRelaxedClockLogNormal." + ext
|
|
assert_predicate testpath/output, :exist?, "Failed to create #{output}"
|
|
end
|
|
end
|
|
end
|