109 lines
4 KiB
Ruby
109 lines
4 KiB
Ruby
require 'formula'
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class Blast < Formula
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homepage 'http://blast.ncbi.nlm.nih.gov/'
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url 'ftp://ftp.ncbi.nih.gov/blast/executables/blast+/2.2.25/ncbi-blast-2.2.25+-src.tar.gz'
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version '2.2.25'
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md5 '01256b808e3af49a5087945b6a8c8293'
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fails_with :clang do
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build 421
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end
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option 'with-dll', "Create dynamic binaries instead of static"
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# fixes to 2.2.25 acknowledged upstream by Aaron U. per email
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# inform configure about -Os
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def patches
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DATA
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end
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def install
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args = ["--prefix=#{prefix}"]
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args << "--with-dll" if build.include? 'with-dll'
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cd 'c++' do
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system "./configure", *args
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system "make"
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system "make install"
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end
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end
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def caveats; <<-EOS.undent
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Using the option '--with-dll' will create dynamic binaries instead of
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static. NCBI Blast static binaries are approximately 28-times larger
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than dynamic binaries.
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Static binaries should be used for speed if the executable requires
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fast startup time, such as if another program is frequently restarting
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the blast executables.
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EOS
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end
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end
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__END__
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---
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c++/src/build-system/configure | 24 ++++++++++++------------
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1 file changed, 12 insertions(+), 12 deletions(-)
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diff --git a/c++/src/build-system/configure b/c++/src/build-system/configure
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index 2f467a2..a2d14c7 100755
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--- a/c++/src/build-system/configure
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+++ b/c++/src/build-system/configure
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@@ -8538,29 +8538,29 @@ fi
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if test "$compiler" != "MSVC" ; then
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if test "$with_debug" = "no" ; then
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with_optimization=${with_optimization:="yes"}
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- CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-g[0-9]*//g'`
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- CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-g[0-9]*//g'`
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- LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-g[0-9]*//g'`
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+ CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
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+ CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
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+ LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-g[0-9s]*//g'`
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CPPFLAGS="-DNDEBUG $CPPFLAGS"
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else
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with_optimization=${with_optimization:="no"}
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- if echo " $CFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ; then
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+ if echo " $CFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ; then
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CFLAGS="$CFLAGS -g" ; fi
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- if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ; then
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+ if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ; then
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CXXFLAGS="$CXXFLAGS -g" ; fi
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if test "${with_tcheck=no}" = "no" ; then
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CPPFLAGS="-D_DEBUG $CPPFLAGS"
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else
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CPPFLAGS="-DNDEBUG $CPPFLAGS"
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fi
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- if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-g[0-9]*' ;
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+ if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-g[0-9s]*' ;
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then LDFLAGS="$LDFLAGS -g" ; fi
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STRIP="@:"
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fi
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- NOPT_CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
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- NOPT_CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
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- NOPT_LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-x*O[0-9]*//g'`
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+ NOPT_CFLAGS=` echo " $CFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
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+ NOPT_CXXFLAGS=`echo " $CXXFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
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+ NOPT_LDFLAGS=` echo " $LDFLAGS" | sed 's/[ ]-x*O[0-9s]*//g'`
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if test "${with_tcheck-no}" != "no"; then
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# Suppress warnings when building with ICC.
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NOPT_CFLAGS="$NOPT_CFLAGS -O0"
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@@ -8575,11 +8575,11 @@ if test "$compiler" != "MSVC" ; then
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FAST_CXXFLAGS="$CXXFLAGS"
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FAST_LDFLAGS="$LDFLAGS"
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else
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- if echo " $CFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
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+ if echo " $CFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
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CFLAGS="$CFLAGS -O" ; fi
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- if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
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+ if echo " $CXXFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
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CXXFLAGS="$CXXFLAGS -O" ; fi
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- if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9]*' ; then
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+ if echo " $LDFLAGS" |grep -v >/dev/null '[ ]-x*O[0-9s]*' ; then
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LDFLAGS="$LDFLAGS -O" ; fi
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FAST_CFLAGS="$NOPT_CFLAGS $FAST_CFLAGS"
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FAST_CXXFLAGS="$NOPT_CXXFLAGS $FAST_CXXFLAGS"
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--
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1.7.9.2
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