45 lines
1.8 KiB
Ruby
45 lines
1.8 KiB
Ruby
class Diamond < Formula
|
|
desc "Accelerated BLAST compatible local sequence aligner"
|
|
homepage "https://ab.inf.uni-tuebingen.de/software/diamond/"
|
|
url "https://github.com/bbuchfink/diamond/archive/v0.9.18.tar.gz"
|
|
sha256 "cea41c7b7a19ca1b85e8db35e1861d6602a2ccc53c5ffdd0ce761e5f5bb322ee"
|
|
|
|
bottle do
|
|
cellar :any_skip_relocation
|
|
sha256 "58cdd174edfc595e40a3204c8f6d61f5c86c11b553f33e36d6296f47bd57abda" => :high_sierra
|
|
sha256 "0ffff8882227352fcb3d47f19885c6b5b213fa2e3c37484f75c70d2849a6fb48" => :sierra
|
|
sha256 "355d03ab431c3d7d46fcb5b61a419eced8972c0b6171c4df3c96a8cc857efca4" => :el_capitan
|
|
end
|
|
|
|
depends_on "cmake" => :build
|
|
|
|
def install
|
|
system "cmake", ".", *std_cmake_args
|
|
system "make", "install"
|
|
end
|
|
|
|
test do
|
|
(testpath/"nr.faa").write <<~EOS
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
|
|
grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
|
|
XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
|
|
agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
|
|
eagewrepgrrslqXaeiaplhsslgdrarlrlkk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
|
|
pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
|
|
rqengvnpgggacseprsrhctpawaterdsvskk
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
|
|
fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
|
|
gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
|
|
ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
|
|
gftvlarmvsisXprdppasasqsagitgvshrar
|
|
>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
|
|
ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
|
|
vspcXpgwsrspdlvirpprppkvlglqaXatapg
|
|
EOS
|
|
output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr")
|
|
assert_match "Processed 6 sequences, 572 letters.", output
|
|
end
|
|
end
|