65 lines
1.7 KiB
Ruby
65 lines
1.7 KiB
Ruby
class Cromwell < Formula
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desc "Workflow Execution Engine using Workflow Description Language"
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homepage "https://github.com/broadinstitute/cromwell"
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url "https://github.com/broadinstitute/cromwell/releases/download/38/cromwell-38.jar"
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sha256 "df87c7d3746dc60eb3e8a4a4ce6baae105b420402f55993131c64bf9472ff730"
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head do
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url "https://github.com/broadinstitute/cromwell.git"
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depends_on "sbt" => :build
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end
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bottle :unneeded
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depends_on "akka"
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depends_on :java => "1.8+"
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resource "womtool" do
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url "https://github.com/broadinstitute/cromwell/releases/download/38/womtool-38.jar"
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sha256 "78291f797971891c510d2548a39e1478235e1d397fa72c18bfa067a6e72bec9f"
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end
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def install
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if build.head?
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system "sbt", "assembly"
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libexec.install Dir["target/scala-*/cromwell-*.jar"][0]
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libexec.install Dir["womtool/target/scala-2.12/womtool-*.jar"][0]
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else
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libexec.install Dir["cromwell-*.jar"][0]
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resource("womtool").stage do
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libexec.install Dir["womtool-*.jar"][0]
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end
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end
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bin.write_jar_script Dir[libexec/"cromwell-*.jar"][0], "cromwell", "$JAVA_OPTS"
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bin.write_jar_script Dir[libexec/"womtool-*.jar"][0], "womtool"
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end
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test do
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(testpath/"hello.wdl").write <<~EOS
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task hello {
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String name
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command {
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echo 'hello ${name}!'
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}
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output {
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File response = stdout()
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}
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}
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workflow test {
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call hello
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}
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EOS
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(testpath/"hello.json").write <<~EOS
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{
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"test.hello.name": "world"
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}
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EOS
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result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
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assert_match "test.hello.response", result
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end
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end
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