30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.3.4.tar.gz"
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sha256 "640ae4d808ca69a97e046ff568999981ca196e13171cb08a4ce666a1d078f278"
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bottle do
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cellar :any
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sha256 "954c729dfb76a753d31c2b40dafd543c617930572a903e06d57bdc171a74557b" => :high_sierra
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sha256 "483e1f18fed745ea4aa74aa7ad8d3e2c59aff63715d624b8526c2fb5d5137f23" => :sierra
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sha256 "51174c043be22d4fdd241d94aa718eae53b5d60a8aafc4d023658938e3c421bb" => :el_capitan
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end
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depends_on "tbb"
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def install
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tbb = Formula["tbb"]
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system "make", "install", "WITH_TBB=1", "prefix=#{prefix}",
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"EXTRA_FLAGS=-L #{tbb.opt_lib}", "INC=-I #{tbb.opt_include}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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