30 lines
1.1 KiB
Ruby
30 lines
1.1 KiB
Ruby
class Bcftools < Formula
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desc "Tools for BCF/VCF files and variant calling from samtools"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2"
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sha256 "6f36d0e6f16ec4acf88649fb1565d443acf0ba40f25a9afd87f14d14d13070c8"
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bottle do
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sha256 "4f7b1e8f7df9838484fc0f312d384008a7fc13a7efab375010a9f9d1a1abcec4" => :high_sierra
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sha256 "6bff92a6b2c5aa70f43b6cdb83ee75ab795e41675c289e6a5ffb0428b9192edc" => :sierra
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sha256 "17689cca5a46127c5b90cef24f40cd2446be3803ab0ba315469c254bad50fd74" => :el_capitan
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end
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depends_on "gsl"
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depends_on "htslib"
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depends_on "xz"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}",
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"--enable-libgsl"
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system "make", "install"
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pkgshare.install "test/query.vcf"
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end
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test do
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output = shell_output("#{bin}/bcftools stats #{pkgshare}/query.vcf")
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assert_match "number of SNPs:\t3", output
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assert_match "fixploidy", shell_output("#{bin}/bcftools plugin -l")
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end
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end
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