25 lines
744 B
Ruby
25 lines
744 B
Ruby
class PicardTools < Formula
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desc "Tools for manipulating HTS data and formats"
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homepage "https://broadinstitute.github.io/picard/"
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url "https://github.com/broadinstitute/picard/releases/download/2.20.8/picard.jar"
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sha256 "aff92d618ee9e6bafc1ab4fbfa89fc557a0dbe596ae4b92fe3bf93ebf95c7105"
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bottle :unneeded
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depends_on :java => "1.8+"
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def install
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libexec.install "picard.jar"
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bin.write_jar_script libexec/"picard.jar", "picard"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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cmd = "#{bin}/picard NormalizeFasta I=test.fasta O=/dev/stdout"
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assert_match "TCTCTG", shell_output(cmd)
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end
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end
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