54 lines
1.7 KiB
Ruby
54 lines
1.7 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast protein sequence search and clustering"
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homepage "https://mmseqs.org/"
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url "https://github.com/soedinglab/MMseqs2/archive/7-4e23d.tar.gz"
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version "7-4e23d"
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sha256 "39b04ea60741ca209c37be129b852b5024fed1691817e6eb1e80e382f7261724"
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bottle do
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cellar :any
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sha256 "e90c697974e8bfac9ab2cba1c25521de6d8967f42c4191f5f53fb97809fce4e3" => :mojave
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sha256 "3d65ac201907466812a84eba4e5cbd65e9921844b20d611b89ee4dadcd748529" => :high_sierra
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sha256 "e27970a0d1e68e4385dd0aa29a0d91a62d297b4879a12ea5a512ac2356b333a7" => :sierra
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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cxxstdlib_check :skip
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fails_with :clang # needs OpenMP support
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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:revision => "d3607c7913e67c7bb553a8dff0cc66eeb3387506"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << "-DHAVE_SSE4_1=1"
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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unless Hardware::CPU.sse4?
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"MMseqs2 requires at least SSE4.1 CPU instruction support."
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end
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end
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test do
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system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
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system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
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assert_predicate testpath/"res", :exist?
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assert_predicate (testpath/"res").size, :positive?
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assert_predicate testpath/"res.index", :exist?
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assert_predicate (testpath/"res.index").size, :positive?
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end
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end
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