0bcc122201
- Upgrade cufflinks to version 2.0.2 - Add a dep on eigen. It won't build without it. - Make all the deps `:build` for the same reason. - It still fails with clang, but llvm is okay. - Add an env var, `EIGEN_CPPFLAGS` to help it find eigen. - Add to `LDFLAGS` an `-lboost_system-mt` fixes missing symbols - Run sed on 120 files to fix a boost::FOREACH issue. - Note in the comments the source of the sed fix. - Specify `--mandir` even though no man pages at this time. - Run `make` in parallel. Run the install as a j1. - Works well with superenv Fixes Homebrew/homebrew#14385 Closes Homebrew/homebrew#15543. Signed-off-by: Adam Vandenberg <flangy@gmail.com>
32 lines
1 KiB
Ruby
32 lines
1 KiB
Ruby
require 'formula'
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class Cufflinks < Formula
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homepage 'http://cufflinks.cbcb.umd.edu/'
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url 'http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.0.2.tar.gz'
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sha1 '91954b4945c49ca133b39bffadf51bdf9ec2ff26'
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depends_on 'boost' => :build
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depends_on 'samtools' => :build
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depends_on 'eigen' => :build
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fails_with :clang do
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build 421
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end
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def install
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ENV['EIGEN_CPPFLAGS'] = '-I'+Formula.factory('eigen').include/'eigen3'
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ENV.append 'LDFLAGS', '-lboost_system-mt'
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cd 'src' do
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# Fixes 120 files redefining `foreach` that break building with boost
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# See http://seqanswers.com/forums/showthread.php?t=16637
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`for x in *.cpp *.h; do sed 's/foreach/for_each/' $x > x; mv x $x; done`
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inreplace 'common.h', 'for_each.hpp', 'foreach.hpp'
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end
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system "./configure", "--disable-debug", "--disable-dependency-tracking",
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"--prefix=#{prefix}",
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"--mandir=#{man}"
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system 'make'
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ENV.j1
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system 'make install'
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end
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end
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