70 lines
2.6 KiB
Ruby
70 lines
2.6 KiB
Ruby
require 'formula'
|
|
|
|
class Bamtools < Formula
|
|
homepage 'https://github.com/pezmaster31/bamtools'
|
|
url 'https://github.com/downloads/pezmaster31/bamtools/bamtools-1.0.2.tar.gz'
|
|
sha1 '70d4a1f8d7da73dd381b609b618ed19b6184366e'
|
|
|
|
head 'https://github.com/pezmaster31/bamtools.git'
|
|
|
|
depends_on 'cmake' => :build
|
|
|
|
# Install libbamtools in /usr/local/lib.
|
|
# Link statically with libbamtools-util and libjsoncpp, since
|
|
# they're not installed by default. Sent upstream:
|
|
# https://github.com/pezmaster31/bamtools/pull/55
|
|
def patches
|
|
DATA
|
|
end
|
|
|
|
def install
|
|
mkdir 'default' do
|
|
system "cmake", "..", *std_cmake_args
|
|
system "make install"
|
|
end
|
|
end
|
|
|
|
def test
|
|
system "#{bin}/bamtools", "--version"
|
|
end
|
|
end
|
|
|
|
__END__
|
|
diff -ur bamtools-1.0.2.orig/src/api/CMakeLists.txt bamtools-1.0.2/src/api/CMakeLists.txt
|
|
--- bamtools-1.0.2.orig/src/api/CMakeLists.txt 2011-09-09 18:59:44.000000000 -0700
|
|
+++ bamtools-1.0.2/src/api/CMakeLists.txt 2012-06-15 10:46:18.000000000 -0700
|
|
@@ -54,8 +54,8 @@
|
|
target_link_libraries( BamTools-static z )
|
|
|
|
# set library install destinations
|
|
-install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
|
|
-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
|
|
+install( TARGETS BamTools LIBRARY DESTINATION "lib" RUNTIME DESTINATION "bin")
|
|
+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib")
|
|
|
|
# export API headers
|
|
include(../ExportHeader.cmake)
|
|
diff -ur bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt
|
|
--- bamtools-1.0.2.orig/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
|
|
+++ bamtools-1.0.2/src/third_party/jsoncpp/CMakeLists.txt 2012-06-15 10:41:49.000000000 -0700
|
|
@@ -10,7 +10,7 @@
|
|
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
|
|
|
|
# create jsoncpp library
|
|
-add_library ( jsoncpp SHARED
|
|
+add_library ( jsoncpp STATIC
|
|
json_reader.cpp
|
|
json_value.cpp
|
|
json_writer.cpp
|
|
diff -ur bamtools-1.0.2.orig/src/utils/CMakeLists.txt bamtools-1.0.2/src/utils/CMakeLists.txt
|
|
--- bamtools-1.0.2.orig/src/utils/CMakeLists.txt 2012-06-15 10:39:40.000000000 -0700
|
|
+++ bamtools-1.0.2/src/utils/CMakeLists.txt 2012-06-15 10:41:34.000000000 -0700
|
|
@@ -13,7 +13,7 @@
|
|
add_definitions( -fPIC ) # (attempt to force PIC compiling on CentOS, not being set on shared libs by CMake)
|
|
|
|
# create BamTools utils library
|
|
-add_library ( BamTools-utils SHARED
|
|
+add_library ( BamTools-utils STATIC
|
|
bamtools_fasta.cpp
|
|
bamtools_options.cpp
|
|
bamtools_pileup_engine.cpp
|