40 lines
1.4 KiB
Ruby
40 lines
1.4 KiB
Ruby
class Beast < Formula
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desc "Bayesian Evolutionary Analysis Sampling Trees"
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homepage "https://beast.community/"
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url "https://github.com/beast-dev/beast-mcmc/archive/v1.10.4.tar.gz"
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sha256 "e2f8a30e4f695bf0e58ac3e94778459a1db6cd0d476556d86c563e4b6a1181f7"
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head "https://github.com/beast-dev/beast-mcmc.git"
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bottle do
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cellar :any_skip_relocation
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sha256 "3c894f422a0ee8e3a60a4fc4383b7c92e3373bcddf913034ef92541a346c5d8c" => :mojave
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sha256 "a5c4138c07edad9c5fe6cb2a24c50c3b7e77abfa206f31e0b6d2f6ac62f2fa5b" => :high_sierra
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sha256 "c3b2d7c0e17ee1072e0278ff8cfc4d27cee98450e3b23c29a2e0724c6278def8" => :sierra
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end
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depends_on "ant" => :build
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depends_on "beagle"
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depends_on :java => "1.7+"
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def install
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system "ant", "linux"
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libexec.install Dir["release/Linux/BEASTv*/*"]
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pkgshare.install_symlink libexec/"examples"
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bin.install_symlink Dir[libexec/"bin/*"]
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end
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test do
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cp pkgshare/"examples/TestXML/ClockModels/testUCRelaxedClockLogNormal.xml", testpath
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# Run fewer generations to speed up tests
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inreplace "testUCRelaxedClockLogNormal.xml", 'chainLength="10000000"',
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'chainLength="100000"'
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system "#{bin}/beast", "testUCRelaxedClockLogNormal.xml"
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%w[ops log trees].each do |ext|
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output = "testUCRelaxedClockLogNormal." + ext
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assert_predicate testpath/output, :exist?, "Failed to create #{output}"
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end
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end
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end
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