34 lines
1.1 KiB
Ruby
34 lines
1.1 KiB
Ruby
class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.10/htslib-1.10.tar.bz2"
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sha256 "7ae44dd9faeb4c4293e9bb4815164ac28c6c6fae81fed4791df2fa878f57a972"
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bottle do
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cellar :any
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sha256 "dbacdef5228a255b0c1c3def472eacabebe2785143683f56dce4ae2df12ef601" => :catalina
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sha256 "7ed8777a2c6aa4bf909d9adb9e41e7b3c9c3f249d6ba6b17ca23b0ef65400b28" => :mojave
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sha256 "330fb579bea2afe187a93b02efb826349efd8b4fc1ffe59b03c812adfece73f8" => :high_sierra
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end
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depends_on "xz"
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uses_from_macos "bzip2"
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uses_from_macos "curl"
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uses_from_macos "zlib"
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def install
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system "./configure", "--prefix=#{prefix}", "--enable-libcurl"
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system "make", "install"
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pkgshare.install "test"
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end
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test do
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sam = pkgshare/"test/ce#1.sam"
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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