2017-09-29 20:58:34 +00:00
|
|
|
class Htslib < Formula
|
|
|
|
|
desc "C library for high-throughput sequencing data formats"
|
2018-02-15 18:16:26 +00:00
|
|
|
homepage "https://www.htslib.org/"
|
2018-04-03 21:42:38 +00:00
|
|
|
url "https://github.com/samtools/htslib/releases/download/1.8/htslib-1.8.tar.bz2"
|
|
|
|
|
sha256 "c0ef1eec954a98cc708e9f99f6037db85db45670b52b6ab37abcc89b6c057ca1"
|
2017-09-29 20:58:34 +00:00
|
|
|
|
2017-10-31 13:01:01 +00:00
|
|
|
bottle do
|
|
|
|
|
cellar :any
|
2018-04-03 22:04:42 +00:00
|
|
|
sha256 "9bbd0f83d2f5e7ea2d9889bfabb6f47aba7ea5d9dfb9070f0566bd7bba9e4f32" => :high_sierra
|
|
|
|
|
sha256 "5ec146ac61a5e7cff8c8f71f3a4ddf64871d4dd3dcfd043e4b5630292abe39fa" => :sierra
|
|
|
|
|
sha256 "b122c09b37bf213d9eca36ae852011af1c56210d755dc44103ca11882b4a9b7d" => :el_capitan
|
2017-10-31 13:01:01 +00:00
|
|
|
end
|
|
|
|
|
|
2017-09-29 20:58:34 +00:00
|
|
|
depends_on "xz"
|
|
|
|
|
|
|
|
|
|
def install
|
|
|
|
|
system "./configure", "--prefix=#{prefix}"
|
|
|
|
|
system "make", "install"
|
|
|
|
|
pkgshare.install "test"
|
|
|
|
|
end
|
|
|
|
|
|
|
|
|
|
test do
|
|
|
|
|
sam = pkgshare/"test/ce#1.sam"
|
|
|
|
|
assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
|
|
|
|
|
system "#{bin}/bgzip -c #{sam} > sam.gz"
|
|
|
|
|
assert_predicate testpath/"sam.gz", :exist?
|
|
|
|
|
system "#{bin}/tabix", "-p", "sam", "sam.gz"
|
|
|
|
|
assert_predicate testpath/"sam.gz.tbi", :exist?
|
|
|
|
|
end
|
|
|
|
|
end
|
