2011-02-28 17:30:22 +00:00
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require 'formula'
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2011-03-10 05:11:03 +00:00
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class Samtools < Formula
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2011-09-05 14:53:39 +00:00
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url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2'
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2011-02-28 17:30:22 +00:00
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homepage 'http://samtools.sourceforge.net/'
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2011-09-05 14:53:39 +00:00
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md5 '71dab132e21c0766f0de84c2371a9157'
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2011-04-22 16:36:32 +00:00
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head 'https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools'
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2011-02-28 17:30:22 +00:00
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def install
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system "make"
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system "make razip"
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2011-07-07 13:55:34 +00:00
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system "cd bcftools; make"
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2011-02-28 17:30:22 +00:00
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2011-09-05 14:53:39 +00:00
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bin.install %w{samtools razip bcftools/bcftools bcftools/vcfutils.pl}
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bin.install %w{misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/seqtk misc/wgsim}
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bin.install Dir['misc/*.pl']
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2011-02-28 17:30:22 +00:00
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lib.install 'libbam.a'
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2011-07-07 13:55:34 +00:00
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man1.install %w{samtools.1}
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2011-09-05 14:53:39 +00:00
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(share+'samtools').install %w{examples}
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(include+'bam').install Dir['*.h']
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2011-02-28 17:30:22 +00:00
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end
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end
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