2017-09-25 06:44:46 +00:00
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class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/"
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2017-10-06 02:23:21 +00:00
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url "https://github.com/BenLangmead/bowtie2/archive/v2.3.3.1.tar.gz"
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sha256 "8b9c0b9c595ebcddcac5feaf6acb44b2294d6deb91de107596ecad242a1a58e9"
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2017-09-25 06:44:46 +00:00
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2017-09-25 08:00:05 +00:00
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bottle do
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2017-10-06 02:55:41 +00:00
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sha256 "fa4f67c2361205d54698e9a87f2a586d95ae8c34aa50c98bb72c3d522903333f" => :high_sierra
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sha256 "b57f2ec643d75111a7f1078d656e376e24bd871fe04ca32fa63cfb2b292bdacd" => :sierra
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sha256 "8455b5498446476972e353ca55b31e8acbd141c696cc8562edcc16a0d4235584" => :el_capitan
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2017-09-25 08:00:05 +00:00
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end
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2017-09-25 06:44:46 +00:00
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depends_on "tbb"
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def install
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tbb = Formula["tbb"]
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system "make", "install", "WITH_TBB=1", "prefix=#{prefix}",
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"EXTRA_FLAGS=-L #{tbb.opt_lib}", "INC=-I #{tbb.opt_include}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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