Upgrade glfw to version 2.7.5. Change the make target to
`cocoa-dist-install` so that it builds the shared library also.
ClosesHomebrew/homebrew#11717.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
Upgrade plzip to version 0.9.
Correct the configure flags. It builds just like lzlib, lzip.
Add make check (~2sec) for data integrity. Is massively parallel.
ClosesHomebrew/homebrew#11716.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
Adding --enable-plugins and skip_clean 'bin' since dyld will otherwise fail.
ClosesHomebrew/homebrew#9667.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
The 64bit version of GHC became officially supported with the 7.0.2 release.
This is now used as the default unless the user does not have the required
hardware or invokes the `--32-bit` flag.
ClosesHomebrew/homebrew#11490.
ClosesHomebrew/homebrew#11491.
ClosesHomebrew/homebrew#11708.
The incompatibility with Leopard is now expressed as a requirement. Caveats
added explaining that the names of the command line tools have been altered to
prevent clashes with other packages.
Added a makefile patch to fbida-2.09
The patch has also been submitted upstream to the author.
FixesHomebrew/homebrew#10801.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
The Shen 3.1 source tarball has frequent in-place changes, which causes
the formula checksum to break.
Would accept this as a head-only formula in Homebrew-ALT, or if upstream
stops doing these sorts of non-versioned updates.
Newer versions of SPIM are self-contained downloads
(and use Qt.)
Suggest that they be installed from the website:
http://spimsimulator.sourceforge.net/
This is an older text processing tool that is useful for doing alignment
of trailing characters (e.g., block of /* */ comments).
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
* After seven years, libmikmod is back to active status.
* Change to the new Homepage.
* Upgrade to version 3.2.0b3 using the new tarball.
* Use the sha256 listed on the website.
* Remove all the autoreconf related commands and associated deps.
* Use the correct -Og or O2 for debug.
* Adjust the --with-debug option description to reflect that.
* Add the ENV.x11 rather than three configure flags for --with-x.
* Remove the --with-osx because it finds we are osx correctly.
* Remove the --with-debug=no, as it is the default.
* Keep the four inreplaces, as they are all still needed.
* All patches are merged upstream in HEAD. Noted in formula.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
GMAP/GSNAP is a widely used tool for alignment of high-throughput sequence data.
See details about GMAP/GSNAP here:
http://research-pub.gene.com/gmap
Here is the referencable peer-reviewed paper:
Thomas D. Wu and Colin K. Watanabe
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
Bioinformatics 2005 21:1859-1875
PUBMED ID 15728110 full citation at http://www.ncbi.nlm.nih.gov/pubmed/15728110
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Git can cache credentials used when accessing remotes over HTTP; this
helper provides integration with the OS X keychain.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
