The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing that are well suited for processing High
Throughput Sequencing data
ClosesHomebrew/homebrew#9697.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
Adding new formula for libgtextutils which is a required library for
fastx_toolkit
ClosesHomebrew/homebrew#9696.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
nuttcp is a network performance measurement tool intended for use by
network and system managers. Its most basic usage is to determine the
raw TCP (or UDP) network layer throughput by transferring memory
buffers from a source system across an interconnecting network to a
destination system, either transferring data for a specified time
interval, or alternatively transferring a specified number of bytes.
ClosesHomebrew/homebrew#9840.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
In the Makefile, `FFLAGS` was being set to the value of `CFLAGS` which no
longer works when the flags are being tuned for the Clang compiler. `FCFLAGS`
is now used instead as it contains a copy of `CFLAGS` that has been edited for
use by GFortran.
FixesHomebrew/homebrew#11119.
Rakudo Star comes with its own version of Parrot that is designed to match the
target release of rakudo, so I am removing the Parrot dependency and having it
build against packages version of Parrot.
Also, having it install all of the tools, this includes parrot, nqp, and all
of the modules that come with Rakudo Star instead of just installing the perl6
executable.
Also added caveat about installing parrot and rakudo side by side.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
This is a new formula for ipbt. It plays back recordings made with
ttyrec.
ClosesHomebrew/homebrew#9948.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
This causes configure to pick the wrong libpixman on at least 10.6, and
issues with SVG on at least 10.7. So remove it, and we'll try to fix any
remaining issues with a different approach, e.g. special ENV vars for
freetype.
cf Homebrew/homebrew#11036, Homebrew/homebrew#11042, Homebrew/homebrew#11049.
Signed-off-by: Jack Nagel <jacknagel@gmail.com>
Upgrade jhead to version 2.95. Install jhead.1 and usage.html.
Remove `chmod +x jhead`. It brews as a 555.
ClosesHomebrew/homebrew#11076.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
Upgrade to clhep 2.1.2.2. Fixes compile error with clang.
Builds in parallel. Remove ENV.j1. Passes `make test` on Lion
and Snow Leopard with five compilers from Xcode-4.3.1 and 4.0.2.
ClosesHomebrew/homebrew#11080.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
The XPA messaging system provides seamless
communication between many kinds of Unix
programs, including X programs and Tcl/Tk programs.
Signed-off-by: Adam Vandenberg <flangy@gmail.com>
