33 lines
1.2 KiB
Ruby
33 lines
1.2 KiB
Ruby
class Bedtools < Formula
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desc "Tools for genome arithmetic (set theory on the genome)"
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homepage "https://github.com/arq5x/bedtools2"
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url "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz"
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sha256 "15db784f60a11b104ccbc9f440282e5780e0522b8d55d359a8318a6b61897977"
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bottle do
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cellar :any_skip_relocation
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sha256 "b1c22d44db6adf632fd5a2b71b21edfb4d2a097871e0609fe447f5b673db4fb1" => :high_sierra
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sha256 "7d17967daf92bbcaabd2bfec258af5cd7fbd0d5a9918470ba2484189f5fd76bc" => :sierra
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sha256 "5bd284164362a938830f9bbe1a9c964da513a1819ba9f9fef2a807c528b7e89c" => :el_capitan
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end
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# Remove for > 2.26.0
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# 24 Sep 2017 "strandqueue: de-const for stricter Xcode 9 rules"
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if DevelopmentTools.clang_build_version >= 900
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patch do
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url "https://github.com/arq5x/bedtools2/commit/c0b7d934cc61ad6c83eb3d99374263e7ec51722d.diff?full_index=1"
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sha256 "b37113ff55b916787f29c12dece8b7f4289de30427c3a22a8cb332aa32d936dd"
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end
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end
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def install
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system "make"
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system "make", "install", "prefix=#{prefix}"
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prefix.install "RELEASE_HISTORY"
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end
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test do
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(testpath/"t.bed").write "c\t1\t5\nc\t4\t9"
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assert_equal "c\t1\t9", shell_output("#{bin}/bedtools merge -i t.bed").chomp
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end
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end
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