30 lines
1 KiB
Ruby
30 lines
1 KiB
Ruby
class Igv < Formula
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desc "Interactive Genomics Viewer"
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homepage "https://www.broadinstitute.org/software/igv"
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url "https://data.broadinstitute.org/igv/projects/downloads/2.5/IGV_2.5.3.zip"
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sha256 "d33f6e20aaf5158770c6154953b8b3df89ced0f9416b399502864d3ccd44f22a"
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revision 1
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bottle :unneeded
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depends_on :java
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def install
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inreplace ["igv.sh", "igvtools"], /^prefix=.*/, "prefix=#{libexec}"
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inreplace "igvtools", "@igv.args", '@"${prefix}/igv.args"'
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bin.install "igv.sh" => "igv"
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bin.install "igvtools"
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libexec.install "igv.args", "lib"
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bin.env_script_all_files libexec, Language::Java.java_home_env
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end
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test do
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assert_match "Usage:", shell_output("#{bin}/igvtools")
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assert_match "org/broad/igv/ui/IGV.class", shell_output("jar tf #{libexec}/lib/igv.jar")
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# Fails on Jenkins with Unhandled exception: java.awt.HeadlessException
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unless ENV["CI"]
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(testpath/"script").write "exit"
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assert_match "Version", shell_output("#{bin}/igv -b script")
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end
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end
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end
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